Publications

2018 :

Rojas-Lopez, Maricarmen, Mohamed A. Zorgani, Lawrence A. Kelley, Xavier Bailly, Andrey V. Kajava, Ian R. Henderson, Fabio Polticelli, Mariagrazia Pizza, Roberto Rosini, and Mickaël Desvaux. “Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger.” Frontiers in Microbiology 8 (2018). doi: 10.3389/fmicb.2017.02607

Roche, Daniel B., Phuong Do Viet, Anastasia Bakulina, Layla Hirsh, Silvio C.E. Tosatto, and Andrey V. Kajava. “Classification of β-hairpin repeat proteins.” Journal of Structural Biology 201, no. 2 (2018): 130-138. doi: 10.1016/j.jsb.2017.10.001

Kajava, Andrey V., and Silvio C.E. Tosatto. “Editorial for special issue “Proteins with tandem repeats: sequences, structures and functions”☆.” Journal of Structural Biology 201, no. 2 (2018): 86-87. doi: 10.1016/j.jsb.2017.12.011


2017 :

Bondarev, Stanislav A, Olga V Bondareva, Galina A Zhouravleva, and Andrey V Kajava. “BetaSerpentine: a bioinformatics tool for reconstruction of amyloid structures.” Bioinformatics 34, no. 4 (2017): 599-608. doi: 10.1093/bioinformatics/btx629

Roche, Daniel B., Etienne Villain, and Andrey V. Kajava. “Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms.” Protein Science 26, no. 9 (2017): 1864-1869. doi: 10.1002/pro.3225


2016 :

Piovesan, Damiano, Francesco Tabaro, Ivan Mičetić, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidović, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmar, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Eva Schad, Antoine Schramm, Beata Szabo, Agnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljković, Salvador Ventura, Wim Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, and Silvio C.E. Tosatto. “DisProt 70: a major update of the database of disordered proteins.” Nucleic Acids Research 45, no. D1 (2016): D219-D227. doi: 10.1093/nar/gkw1056

Paladin, Lisanna, Layla Hirsh, Damiano Piovesan, Miguel A. Andrade-Navarro, Andrey V. Kajava, and Silvio C.E. Tosatto. “RepeatsDB 20: improved annotation, classification, search and visualization of repeat protein structures.” Nucleic Acids Research 45, no. D1 (2016): D308-D312. doi: 10.1093/nar/gkw1136

Vallejo, Andres F., Nora L. Martinez, Alejandra Tobon, Jackeline Alger, Marcus V. Lacerda, Andrey V. Kajava, Myriam Arévalo-Herrera, and Sócrates Herrera. “Global genetic diversity of the Plasmodium vivax transmission-blocking vaccine candidate Pvs48/45.” Malaria Journal 15, no. 1 (2016). doi: 10.1186/s12936-016-1263-0

Richard, François D., Ronnie Alves, and Andrey V. Kajava. “Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.” Bioinformatics 32, no. 13 (2016): 1952-1958. doi: 10.1093/bioinformatics/btw118


2015 :

Dearborn, Altaira D., Joseph S. Wall, Naiqian Cheng, J. Bernard Heymann, Andrey V. Kajava, Jobin Varkey, Ralf Langen, and Alasdair C. Steven. “α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated Protofibrils.” Journal of Biological Chemistry 291, no. 5 (2015): 2310-2318. doi: 10.1074/jbc.M115.698787

Bazan, J Fernando, and Andrey V Kajava. “Designs on a curve.” Nature Structural & Molecular Biology 22, no. 2 (2015): 103-105. doi: 10.1038/nsmb.2966

Kholod, Natalia, Dmitry Sivogrivov, Oleg Latypov, Sergey Mayorov, Rafail Kuznitsyn, Andrey V. Kajava, Mikhail Shlyapnikov, and Igor Granovsky. “Single substitution in bacteriophage T4 RNase H alters the ratio between its exo- and endonuclease activities.” Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 781 (2015): 49-57. doi: 10.1016/j.mrfmmm.2015.09.004

Do Viet, Phuong, Daniel B. Roche, and Andrey V. Kajava. “TAPO: A combined method for the identification of tandem repeats in protein structures.” FEBS Letters 589, no. 19PartA (2015): 2611-2619. doi: 10.1016/j.febslet.2015.08.025

Richard, F. D., and A. V. Kajava. “In search of the boundary between repetitive and non-repetitive protein sequences.” Biochemical Society Transactions 43, no. 5 (2015): 807-811. doi: 10.1042/BST20150073

Ramya, L., N. Gautham, Laurent Chaloin, and Andrey V. Kajava. “Restricted mobility of side chains on concave surfaces of solenoid proteins may impart heightened potential for intermolecular interactions.” Proteins: Structure, Function, and Bioinformatics 83, no. 9 (2015): 1654-1664. doi: 10.1002/prot.24851

Wang, Keke, Philippe Remigi, Maria Anisimova, Fabien Lonjon, Ilona Kars, Andrey Kajava, Chien-Hui Li, Chiu-Ping Cheng, Fabienne Vailleau, Stéphane Genin, and Nemo Peeters. “Functional assignment to positively selected sites in the core type III effector RipG7 fromRalstonia solanacearum.” Molecular Plant Pathology 17, no. 4 (2015): 553-564. doi: 10.1111/mpp.12302

Bondarev, Stanislav A, Galina A Zhouravleva, Mikhail V Belousov, and Andrey V Kajava. “Structure-based view on [PSI+] prion properties.” Prion 9, no. 3 (2015): 190-199. doi: 10.1080/19336896.2015.1044186

Fort, P., A. V. Kajava, F. Delsuc, and O. Coux. “Evolution of Proteasome Regulators in Eukaryotes.” Genome Biology and Evolution 7, no. 5 (2015): 1363-1379. doi: 10.1093/gbe/evv068

Ahmed, Abdullah B., Nadia Znassi, Marie-Thérèse Château, and Andrey V. Kajava. “A structure-based approach to predict predisposition to amyloidosis.” Alzheimer's & Dementia 11, no. 6 (2015): 681-690. doi: 10.1016/j.jalz.2014.06.007


2014 :

Kajava, Andrey V., Karsten Klopffleisch, Shuhua Chen, and Kay Hofmann. “Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s.” Sci Rep 4 (2014): 7436. doi: 10.1038/srep07436

Balam, Saidou, Sope Olugbile, Catherine Servis, Mahamadou Diakité, Alba D’Alessandro, Geraldine Frank, Remy Moret, Issa Nebie, Marcel Tanner, Ingrid Felger, Thomas Smith, Andrey V Kajava, François Spertini, and Giampietro Corradin. “Plasmodium falciparum merozoite surface protein 2: epitope mapping and fine specificity of human antibody response against non-polymorphic domains.” Malaria Journal 13, no. 1 (2014): 510. doi: 10.1186/1475-2875-13-510

Huang, Rick K., Ulrich Baxa, Gudrun Aldrian, Abdullah B. Ahmed, Joseph S. Wall, Naoko Mizuno, Oleg Antzutkin, Alasdair C. Steven, and Andrey V. Kajava. “Conformational Switching in PolyGln Amyloid Fibrils Resulting from a Single Amino Acid Insertion.” Biophysical Journal 106, no. 10 (2014): 2134-2142. doi: 10.1016/j.bpj.2014.03.047

Céspedes, Nora, Catherine Habel, Mary Lopez-Perez, Angélica Castellanos, Andrey V. Kajava, Catherine Servis, Ingrid Felger, Remy Moret, Myriam Arévalo-Herrera, Giampietro Corradin, and Sócrates Herrera. “Plasmodium vivax Antigen Discovery Based on Alpha-Helical Coiled Coil Protein Motif.” PLoS ONE 9, no. 6 (2014): e100440. doi: 10.1371/journal.pone.0100440

Richard, François D., and Andrey V. Kajava. “TRDistiller: A rapid filter for enrichment of sequence datasets with proteins containing tandem repeats.” Journal of Structural Biology 186, no. 3 (2014): 386-391. doi: 10.1016/j.jsb.2014.03.013

Benbahouche, Nour El Houda, Ioannis Iliopoulos, István Török, Joachim Marhold, Julien Henri, Andrey V. Kajava, Robert Farkaš, Tore Kempf, Martina Schnölzer, Philippe Meyer, István Kiss, Edouard Bertrand, Bernard M. Mechler, and Bérengère Pradet-Balade. “DrosophilaSpag Is the Homolog of RNA Polymerase II-associated Protein 3 (RPAP3) and Recruits the Heat Shock Proteins 70 and 90 (Hsp70 and Hsp90) during the Assembly of Cellular Machineries.” Journal of Biological Chemistry 289, no. 9 (2014): 6236-6247. doi: 10.1074/jbc.M113.499608


2013 :

Di Domenico, Tomás, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, and Silvio C.E. Tosatto. “RepeatsDB: a database of tandem repeat protein structures.” Nucleic Acids Research 42, no. D1 (2013): D352-D357. doi: 10.1093/nar/gkt1175

Maghzal, Nadim, Hulya A. Kayali, Nazanin Rohani, Andrey V. Kajava, and François Fagotto. “EpCAM Controls Actomyosin Contractility and Cell Adhesion by Direct Inhibition of PKC.” Developmental Cell 27, no. 3 (2013): 263-277. doi: 10.1016/j.devcel.2013.10.003

Bondarev, Stanislav A., Vadim V. Shchepachev, Andrey V. Kajava, and Galina A. Zhouravleva. “Effect of Charged Residues in the N-domain of Sup35 Protein on Prion [PSI+] Stability and Propagation.” Journal of Biological Chemistry 288, no. 40 (2013): 28503-28513. doi: 10.1074/jbc.M113.471805

Céspedes, Nora, Myriam Arévalo-Herrera, Ingrid Felger, Steve Reed, Andrey V. Kajava, Giampietro Corradin, and Sócrates Herrera. “Antigenicity and immunogenicity of a novel chimeric peptide antigen based on the P vivax circumsporozoite protein.” Vaccine 31, no. 42 (2013): 4923-4930. doi: 10.1016/j.vaccine.2013.05.082


2012 :

Corradin, Giampietro, Nora Céspedes, Antonio Verdini, Andrey V. Kajava, Myriam Arévalo-Herrera, and Sócrates Herrera. “Malaria Vaccine Development Using Synthetic Peptides as a Technical Platform.” Synthetic Vaccines (2012): 107-149. doi: 10.1016/B978-0-12-396548-6.00005-6

Jorda, Julien, Thierry Baudrand, and Andrey V. Kajava. “PRDB: Protein Repeat DataBase.” Proteomics 12, no. 9 (2012): 1333-1336. doi: 10.1002/pmic.201100534

Kajava, Andrey V., and Andrey V. Kajava. “Tandem repeats in proteins: From sequence to structure.” Journal of Structural Biology 179, no. 3 (2012): 279-288. doi: 10.1016/j.jsb.2011.08.009

Jorda, Julien, Thierry Baudrand, and Andrey V. Kajava. “PRDB: Protein Repeat DataBase.” Proteomics 12, no. 9 (2012): 1333-1336. doi: 10.1002/pmic.201100534

Ahmed, Abdullah B., and Andrey V. Kajava. “Breaking the amyloidogenicity code: Methods to predict amyloids from amino acid sequence.” FEBS Letters 587, no. 8 (2012): 1089-1095. doi: 10.1016/j.febslet.2012.12.006

Kulangara, Caroline, Samuel Luedin, Olivier Dietz, Sebastian Rusch, Geraldine Frank, Dania Mueller, Mirjam Moser, Andrey V. Kajava, Giampietro Corradin, Hans-Peter Beck, and Ingrid Felger. “Cell Biological Characterization of the Malaria Vaccine Candidate Trophozoite Exported Protein 1.” PLoS ONE 7, no. 10 (2012): e46112. doi: 10.1371/journal.pone.0046112

Schaper, Elke, Andrey V. Kajava, Alain Hauser, and Maria Anisimova. “Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences.” Nucleic Acids Research 40, no. 20 (2012): 10005-10017. doi: 10.1093/nar/gks726


2011 :

Olugbile, Sope, Viviane Villard, Sylvie Bertholet, Ali Jafarshad, Caroline Kulangara, Christian Roussilhon, Geraldine Frank, George W. Agak, Ingrid Felger, Issa Nebie, Karidia Konate, Andrey V. Kajava, Peter Schuck, Pierre Druilhe, François Spertini, and Giampietro Corradin. “Malaria vaccine candidate: Design of a multivalent subunit α-helical coiled coil poly-epitope.” Vaccine 29, no. 40 (2011): 7090-7099. doi: 10.1016/j.vaccine.2011.06.122


2010 :

Tsukada, Takehiro, Lucy Kotlyanskaya, Robert Huynh, Brinda Desai, Stefanie M. Novak, Andrey V. Kajava, Carol C. Gregorio, and Alla S. Kostyukova. “Identification of Residues within Tropomodulin-1 Responsible for Its Localization at the Pointed Ends of the Actin Filaments in Cardiac Myocytes.” Journal of Biological Chemistry 286, no. 3 (2010): 2194-2204. doi: 10.1074/jbc.M110.186924

Corradin, G., A. V. Kajava, and A. Verdini. “Long Synthetic Peptides for the Production of Vaccines and Drugs: A Technological Platform Coming of Age.” Science Translational Medicine 2, no. 50 (2010): 50rv3-50rv3. doi: 10.1126/scitranslmed.3001387

Jorda, Julien, and Andrey V. Kajava. “Protein Homorepeats.” Advances in Protein Chemistry and Structural Biology (2010): 59-88. doi: 10.1016/S1876-1623(10)79002-7

Perez-Victoria, F. J., G. Abascal-Palacios, I. Tascon, A. Kajava, J. G. Magadan, E. P. Pioro, J. S. Bonifacino, and A. Hierro. “Structural basis for the wobbler mouse neurodegenerative disorder caused by mutation in the Vps54 subunit of the GARP complex.” Proceedings of the National Academy of Sciences 107, no. 29 (2010): 12860-12865. doi: 10.1073/pnas.1004756107

Jorda, Julien, Bin Xue, Vladimir N. Uversky, and Andrey V. Kajava. “Protein tandem repeats - the more perfect, the less structured.” FEBS Journal 277, no. 12 (2010): 2673-2682. doi: 10.1111/j.1742-464X.2010.07684.x

Corradin, Giampietro, and Andrey V Kajava. “Malaria vaccine: why is it taking so long?.” Expert Review of Vaccines 9, no. 2 (2010): 111-114. doi: 10.1586/erv.09.154

Kajava, Andrey V., Ulrich Baxa, and Alasdair C. Steven. “β arcades: recurring motifs in naturally occurring and disease-related amyloid fibrils.” The FASEB Journal 24, no. 5 (2010): 1311-1319. doi: 10.1096/fj.09-145979


2009 :

Gondeau, Claire, Giampietro Corradin, Frédéric Heitz, Christian Le Peuch, Andrea Balbo, Peter Schuck, and Andrey V. Kajava. “The C-terminal domain of Plasmodium falciparum merozoite surface protein 3 self-assembles into α-helical coiled coil tetramer.” Molecular and Biochemical Parasitology 165, no. 2 (2009): 153-161. doi: 10.1016/j.molbiopara.2009.01.015

Kajava, Andrey V., and Thierry Vasselon. “A Network of Hydrogen Bonds on the Surface of TLR2 Controls Ligand Positioning and Cell Signaling.” Journal of Biological Chemistry 285, no. 9 (2009): 6227-6234. doi: 10.1074/jbc.M109.063669

Olugbile, S., C. Kulangara, G. Bang, S. Bertholet, E. Suzarte, V. Villard, G. Frank, R. Audran, A. Razaname, I. Nebie, O. Awobusuyi, F. Spertini, A. V. Kajava, I. Felger, P. Druilhe, and G. Corradin. “Vaccine Potentials of an Intrinsically Unstructured Fragment Derived from the Blood Stage-Associated Plasmodium falciparum Protein PFF0165c.” Infection and Immunity 77, no. 12 (2009): 5701-5709. doi: 10.1128/IAI.00652-09

Meli, Albano C., Maria Kondratova, Virginie Molle, Laurent Coquet, Andrey V. Kajava, and Nathalie Saint. “EtpB Is a Pore-Forming Outer Membrane Protein Showing TpsB Protein Features Involved in the Two-Partner Secretion System.” Journal of Membrane Biology 230, no. 3 (2009): 143-154. doi: 10.1007/s00232-009-9195-z

Jorda, Julien, and Andrey V. Kajava. “T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.” Bioinformatics 25, no. 20 (2009): 2632-2638. doi: 10.1093/bioinformatics/btp482

Kulangara, Caroline, Andrey V. Kajava, Giampietro Corradin, and Ingrid Felger. “Sequence Conservation in Plasmodium falciparum α-Helical Coiled Coil Domains Proposed for Vaccine Development.” PLoS ONE 4, no. 5 (2009): e5419. doi: 10.1371/journal.pone.0005419


2008 :

Agak, George W., Philip Bejon, Greg Fegan, Nimmo Gicheru, Viviane Villard, Andrey V. Kajava, Kevin Marsh, and Giampietro Corradin. “Longitudinal analyses of immune responses to Plasmodium falciparum derived peptides corresponding to novel blood stage antigens in coastal Kenya.” Vaccine 26, no. 16 (2008): 1963-1971. doi: 10.1016/j.vaccine.2008.02.020

Kajava, Andrey V., Maria Anisimova, and Nemo Peeters. “Origin and Evolution of GALA-LRR, a New Member of the CC-LRR Subfamily: From Plants to Bacteria?.” PLoS ONE 3, no. 2 (2008): e1694. doi: 10.1371/journal.pone.0001694

Schoehn, G., M. El Bakkouri, C. M. S. Fabry, O. Billet, L. F. Estrozi, L. Le, D. T. Curiel, A. V. Kajava, R. W. H. Ruigrok, and E. J. Kremer. “Three-Dimensional Structure of Canine Adenovirus Serotype 2 Capsid.” Journal of Virology 82, no. 7 (2008): 3192-3203. doi: 10.1128/JVI.02393-07


2007 :

Corradin, Giampietro, Viviane Villard, and Andrey Kajava. “Protein Structure Based Strategies for Antigen Discovery and Vaccine Development Against Malaria and Other Pathogens.” Endocrine‚ Metabolic & Immune Disorders-Drug Targets 7, no. 4 (2007): 259-265. doi: 10.2174/187153007782794371

Cens, Thierry, Matthieu Rousset, Andrey Kajava, and Pierre Charnet. “Molecular Determinant for Specific Ca/Ba Selectivity Profiles of Low and High Threshold Ca2+Channels.” The Journal of General Physiology 130, no. 4 (2007): 415-425. doi: 10.1085/jgp.200709771

Hierro, Aitor, Adriana L. Rojas, Raul Rojas, Namita Murthy, Grégory Effantin, Andrey V. Kajava, Alasdair C. Steven, Juan S. Bonifacino, and James H. Hurley. “Functional architecture of the retromer cargo-recognition complex.” Nature 449, no. 7165 (2007): 1063-1067. doi: 10.1038/nature06216

Villard, Viviane, George W. Agak, Géraldine Frank, Ali Jafarshad, Catherine Servis, Issa Nébié, Sodiomon B. Sirima, Ingrid Felger, Myriam Arevalo-Herrera, Socrates Herrera, Frederic Heitz, Volker Bäcker, Pierre Druilhe, Andrey V. Kajava, and Giampietro Corradin. “Rapid Identification of Malaria Vaccine Candidates Based on α-Helical Coiled Coil Protein Motif.” PLoS ONE 2, no. 7 (2007): e645. doi: 10.1371/journal.pone.0000645


2006 :

Baxa, Ulrich, Todd Cassese, Andrey V. Kajava, and Alasdair C. Steven. “Structure, Function, and Amyloidogenesis of Fungal Prions: Filament Polymorphism and Prion Variants.” Advances in Protein Chemistry (2006): 125-180. doi: 10.1016/S0065-3233(06)73005-4

Kajava, Andrey V., and Alasdair C. Steven. “β‐Rolls, β‐Helices, and Other β‐Solenoid Proteins.” Advances in Protein Chemistry (2006): 55-96. doi: 10.1016/S0065-3233(06)73003-0

Kajava, Andrey V., John M. Squire, and David A.D. Parry. “β‐Structures in Fibrous Proteins.” Advances in Protein Chemistry (2006): 1-15. doi: 10.1016/S0065-3233(06)73001-7

Kajava, Andrey V., and Alasdair C. Steven. “The turn of the screw: Variations of the abundant β-solenoid motif in passenger domains of Type V secretory proteins.” Journal of Structural Biology 155, no. 2 (2006): 306-315. doi: 10.1016/j.jsb.2006.01.015

Hennetin, Jérôme, Bérangère Jullian, Alasdair C. Steven, and Andrey V. Kajava. “Standard Conformations of β-Arches in β-Solenoid Proteins.” Journal of Molecular Biology 358, no. 4 (2006): 1094-1105. doi: 10.1016/j.jmb.2006.02.039

Villard, Viviane, Oleksandr Kalyuzhniy, Orbicia Riccio, Sergey Potekhin, Tatjana N. Melnik, Andrey V. Kajava, Curzio Rüegg, and Giampietro Corradin. “Synthetic RGD-containing α-helical coiled coil peptides promote integrin-dependent cell adhesion.” Journal of Peptide Science 12, no. 3 (2006): 206-212. doi: 10.1002/psc.707


2005 :

Van Mau, N., A.V. Kajava, C. Bonfils, J.-C. Martinou, and M.-C. Harricane. “Interactions of Bax and tBid with Lipid Monolayers.” The Journal of Membrane Biology 207, no. 1 (2005): 1-9. doi: 10.1007/s00232-005-0799-7

Janke, C., and C. Janke. “Tubulin Polyglutamylase Enzymes Are Members of the TTL Domain Protein Family.” Science 308, no. 5729 (2005): 1758-1762. doi: 10.1126/science.1113010

Kajava, Andrey V., Ueli Aebi, and Alasdair C. Steven. “The Parallel Superpleated Beta-structure as a Model for Amyloid Fibrils of Human Amylin.” Journal of Molecular Biology 348, no. 2 (2005): 247-252. doi: 10.1016/j.jmb.2005.02.029

Ortega, Joaquin, J. Bernard Heymann, Andrey V. Kajava, Vicença Ustrell, Martin Rechsteiner, and Alasdair C. Steven. “The Axial Channel of the 20S Proteasome Opens Upon Binding of the PA200 Activator.” Journal of Molecular Biology 346, no. 5 (2005): 1221-1227. doi: 10.1016/j.jmb.2004.12.049


2004 :

Kajava, Andrey V., Sergey A. Potekhin, Giampietro Corradin, and Richard D. Leapman. “Organization of designed nanofibrils assembled fromα-helical peptides as determined by electron microscopy.” Journal of Peptide Science 10, no. 5 (2004): 291-297. doi: 10.1002/psc.520

Rayne, Fabienne, Andrey V. Kajava, Jacqueline Lalanne, and Robert Z. Mamoun. “In Vivo Homodimerisation of HTLV-1 Gag and MA Gives Clues to the Retroviral Capsid and TM Envelope Protein Arrangement.” Journal of Molecular Biology 343, no. 4 (2004): 903-916. doi: 10.1016/j.jmb.2004.09.013

Wagner, Kerstin, Nicole Van Mau, Sylvie Boichot, Andrey V. Kajava, Ulrike Krauss, Christian Le Grimellec, Annette Beck-Sickinger, and Frédéric Heitz. “Interactions of the Human Calcitonin Fragment 9–32 with Phospholipids: A Monolayer Study.” Biophysical Journal 87, no. 1 (2004): 386-395. doi: 10.1529/biophysj.103.036921

Smits, Guillaume, and Andrey V Kajava. “LRRC8 extracellular domain is composed of 17 leucine-rich repeats.” Molecular Immunology 41, no. 5 (2004): 561-562. doi: 10.1016/j.molimm.2004.04.001

Kajava, A. V., U. Baxa, R. B. Wickner, and A. C. Steven. “A model for Ure2p prion filaments and other amyloids: The parallel superpleated  -structure.” Proceedings of the National Academy of Sciences 101, no. 21 (2004): 7885-7890. doi: 10.1073/pnas.0402427101

Kajava, Andrey V., Carlos Gorbea, Joaquı́n Ortega, Martin Rechsteiner, and Alasdair C. Steven. “New HEAT-like repeat motifs in proteins regulating proteasome structure and function.” Journal of Structural Biology 146, no. 3 (2004): 425-430. doi: 10.1016/j.jsb.2004.01.013

Ponchon, Luc, Christian Dumas, Andrey V. Kajava, Didier Fesquet, and André Padilla. “NMR Solution Structure of Mob1, a Mitotic Exit Network Protein and its Interaction with an NDR Kinase Peptide.” Journal of Molecular Biology 337, no. 1 (2004): 167-182. doi: 10.1016/j.jmb.2004.01.010


2003 :

Melnik, T.N., V. Villard, V. Vasiliev, G. Corradin, A.V. Kajava, and S.A. Potekhin. “Shift of fibril-forming ability of the designed  -helical coiled-coil peptides into the physiological pH region.” Protein Engineering Design and Selection 16, no. 12 (2003): 1125-1130. doi: 10.1093/protein/gzg138

Bi, X., A. V. Kajava, T. Jones, Z. N. Demidenko, and M. A. Mortin. “The Carboxy Terminus of Prospero Regulates Its Subcellular Localization.” Molecular and Cellular Biology 23, no. 3 (2003): 1014-1024. doi: 10.1128/MCB.23.3.1014-1024.2003


2002 :

Hirt, Robert P, Natalie Harriman, Andrey V Kajava, and T.Martin Embley. “A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life.” Molecular and Biochemical Parasitology 125, no. 1-2 (2002): 195-199. doi: 10.1016/S0166-6851(02)00211-6

Kajava, Andrey V., Sergey N. Zolov, Konstantin I. Pyatkov, Andrey E. Kalinin, and Marina A. Nesmeyanova. “Processing ofEscherichia coliAlkaline Phosphatase.” Journal of Biological Chemistry 277, no. 52 (2002): 50396-50402. doi: 10.1074/jbc.M205781200

Chu, Ruiai, Jiro Takei, J.Randolph Knowlton, Michelle Andrykovitch, Wuhong Pei, Andrey V. Kajava, Peter J. Steinbach, Xinhua Ji, and Yawen Bai. “Redesign of a Four-helix Bundle Protein by Phage Display Coupled with Proteolysis and Structural Characterization by NMR and X-ray Crystallography.” Journal of Molecular Biology 323, no. 2 (2002): 253-262. doi: 10.1016/S0022-2836(02)00884-7

Kajava, Andrey V., and Andrey V. Kajava. “What Curves α-Solenoids?.” Journal of Biological Chemistry 277, no. 51 (2002): 49791-49798. doi: 10.1074/jbc.M204982200

Kalinin, Andrey E., Andrey V. Kajava, and Peter M. Steinert. “Epithelial barrier function: assembly and structural features of the cornified cell envelope.” BioEssays 24, no. 9 (2002): 789-800. doi: 10.1002/bies.10144

Kajava, Andrey V., and Bostjan Kobe. “Assessment of the ability to model proteins with leucine-rich repeats in light of the latest structural information.” Protein Science 11, no. 5 (2002): 1082-1090. doi: 10.1110/ps.4010102


2001 :

Terskikh, Alexey V., Arkady F. Fradkov, Andrey G. Zaraisky, Andrey V. Kajava, and Brigitte Angres. “Analysis of DsRed Mutants.” Journal of Biological Chemistry 277, no. 10 (2001): 7633-7636. doi: 10.1074/jbc.C100694200

Kobe, B, and B Kobe. “The leucine-rich repeat as a protein recognition motif.” Current Opinion in Structural Biology 11, no. 6 (2001): 725-732. doi: 10.1016/S0959-440X(01)00266-4

Potekhin, S.A, T.N Melnik, V Popov, N.F Lanina, A.A Vazina, P Rigler, A.S Verdini, G Corradin, and A.V Kajava. “De novo design of fibrils made of short α-helical coiled coil peptides.” Chemistry & Biology 8, no. 11 (2001): 1025-1032. doi: 10.1016/S1074-5521(01)00073-4

Kajava, Andrey V., Naiqian Cheng, Ryan Cleaver, Martin Kessel, Martha N. Simon, Eve Willery, Francoise Jacob-Dubuisson, Camille Locht, and Alasdair C. Steven. “Beta-helix model for the filamentous haemagglutinin adhesin of Bordetella pertussis and related bacterial secretory proteins.” Molecular Microbiology 42, no. 2 (2001): 279-292. doi: 10.1046/j.1365-2958.2001.02598.x

Kajava, Andrey V., and Andrey V. Kajava. “Review: Proteins with Repeated Sequence—Structural Prediction and Modeling.” Journal of Structural Biology 134, no. 2-3 (2001): 132-144. doi: 10.1006/jsbi.2000.4328

Leroy, Didier, Andrey V. Kajava, Christian Frei, and Susan M. Gasser. “Analysis of Etoposide Binding to Subdomains of Human DNA Topoisomerase IIαin the Absence of DNA†.” Biochemistry 40, no. 6 (2001): 1624-1634. doi: 10.1021/bi0019141

Hines, Judith, ElzÇbieta Skrzypek, Andrey V Kajava, and Susan C Straley. “Structure–function analysis of Yersinia pestis YopM's interaction with α-thrombin to rule on its significance in systemic plague and to model YopM's mechanism of binding host proteins.” Microbial Pathogenesis 30, no. 4 (2001): 193-209. doi: 10.1006/mpat.2000.0424


2000 :

Spirina, O., Y. Bykhovskaya, A.V. Kajava, T.W. O'Brien, D.P. Nierlich, E.B. Mougey, J.E. Sylvester, H.-R. Graack, B. Wittmann-Liebold, and N. Fischel-Ghodsian. “Heart-specific splice-variant of a human mitochondrial ribosomal protein (mRNA processing; tissue specific splicing).” Gene 261, no. 2 (2000): 229-234. doi: 10.1016/S0378-1119(00)00504-7

Terskikh, A., and A. Terskikh. “"Fluorescent Timer": Protein That Changes Color with Time.” Science 290, no. 5496 (2000): 1585-1588. doi: 10.1126/science.290.5496.1585

Simon-Nobbe, Birgit, Gerald Probst, Andrey V. Kajava, Hannes Oberkofler, Markus Susani, Reto Crameri, Fátima Ferreira, Christof Ebner, and Michael Breitenbach. “IgE-binding epitopes of enolases, a class of highly conserved fungal allergens.” Journal of Allergy and Clinical Immunology 106, no. 5 (2000): 887-895. doi: 10.1067/mai.2000.110799

Kobe, Bostjan, and Andrey V Kajava. “When protein folding is simplified to protein coiling: the continuum of solenoid protein structures.” Trends in Biochemical Sciences 25, no. 10 (2000): 509-515. doi: 10.1016/S0968-0004(00)01667-4

Kajava, A.V, and A.V Kajava. “α-Helical solenoid model for the human involucrin.” FEBS Letters 473, no. 2 (2000): 127-131. doi: 10.1016/S0014-5793(00)01502-7

Kajava, A. V., S. N. Zolov, A. E. Kalinin, and M. A. Nesmeyanova. “The Net Charge of the First 18 Residues of the Mature Sequence Affects Protein Translocation across the Cytoplasmic Membrane of Gram-Negative Bacteria.” Journal of Bacteriology 182, no. 8 (2000): 2163-2169. doi: 10.1128/JB.182.8.2163-2169.2000

Avliyakulov, Nuraly K., Julius Lukeš, Andrey V. Kajava, Bo Liedberg, Ingemar Lundström, and Samuel P. S. Svensson. “Suramin blocks nucleotide triphosphate binding to ribosomal protein L3 from Trypanoplasma borreli.” European Journal of Biochemistry 267, no. 6 (2000): 1723-1731. doi: 10.1046/j.1432-1327.2000.01169.x

Kajava, A.V., S.N. Zolov, A.E. Kalinin, M.A. Nesmeyanova, "The net charge of the first 18 residues of the mature sequence affects protein translocation across the cytoplasmic membrane of gram-negative bacteria" J.Bacteriol182 (2000): 2163-2169. DOI : 182:2163-2169

1999 :

COSTAGLIOLA, SABINE, THONGKUN SUNTHORNTEPVARAKUL, ISABELLE MIGEOTTE, JACQUELINE VAN SANDE, ANDREY M. KAJAVA, SAMUEL REFETOFF, and GILBERT VASSART. “Structure-Function Relationships of Two Loss-of-Function Mutations of the Thyrotropin Receptor Gene.” Thyroid 9, no. 10 (1999): 995-1000. doi: 10.1089/thy.1999.9.995

Kajava, A. V., and A. V. Kajava. “Dimorphism of polyglycine I: structural models for crystal modifications.” Acta Crystallographica Section D Biological Crystallography 55, no. 2 (1999): 436-442. doi: 10.1107/S0907444998012438


1998 :

Leclerc, Denis, Lena Burri, Andrey V. Kajava, Jean-Luc Mougeot, Daniel Hess, Ariel Lustig, Gerd Kleemann, and Thomas Hohn. “The Open Reading Frame III Product of Cauliflower Mosaic Virus Forms a Tetramer through a N-terminal Coiled-coil.” Journal of Biological Chemistry 273, no. 44 (1998): 29015-29021. doi: 10.1074/jbc.273.44.29015

Hofmann, Kay, Philipp Bucher, and Andrey V Kajava. “A model of Cdc25 phosphatase catalytic domain and Cdk-interaction surface based on the presence of a rhodanese homology domain.” Journal of Molecular Biology 282, no. 1 (1998): 195-208. doi: 10.1006/jmbi.1998.1998

Tiktopulo, Elizabeth I., and Andrey V. Kajava. “Denaturation of Type I Collagen Fibrils Is an Endothermic Process Accompanied by a Noticeable Change in the Partial Heat Capacity†.” Biochemistry 37, no. 22 (1998): 8147-8152. doi: 10.1021/bi980360n

Karamyshev, Andrew L, Zemphyra N Karamysheva, Andrey V Kajava, Vladimir N Ksenzenko, and Marina A Nesmeyanova. “Processing of Escherichia coli alkaline phosphatase: role of the primary structure of the signal peptide cleavage region 1 1Edited by A R Fersht.” Journal of Molecular Biology 277, no. 4 (1998): 859-870. doi: 10.1006/jmbi.1997.1617

Kajava, A.V., and A.V. Kajava. “Structural diversity of leucine-rich repeat proteins 1 1Edited by F Cohen.” Journal of Molecular Biology 277, no. 3 (1998): 519-527. doi: 10.1006/jmbi.1998.1643

Gagnebin, J, H Kovar, A V Kajava, A Estreicher, G Jug, P Monnier, and R Iggo. “Use of transcription reporters with novel p53 binding sites to target tumour cells expressing endogenous or virally transduced p53 mutants with altered sequence-specificity.” Oncogene 16, no. 5 (1998): 685-690. doi: 10.1038/sj.onc.1201568


1997 :

Terskikh, A. V., J.-M. Le Doussal, R. Crameri, I. Fisch, J.-P. Mach, and A. V. Kajava. “"Peptabody": A new type of high avidity binding protein.” Proceedings of the National Academy of Sciences 94, no. 5 (1997): 1663-1668. doi: 10.1073/pnas.94.5.1663

Nesmeyanova, Marina A, Andrew L Karamyshev, Zemphyra N Karamysheva, Andrey E Kalinin, Vladimir N Ksenzenko, and Andrey V Kajava. “Positively charged lysine at the N-terminus of the signal peptide of theEscherichia colialkaline phosphatase provides the secretion efficiency and is involved in the interaction with anionic phospholipids.” FEBS Letters 403, no. 2 (1997): 203-207. doi: 10.1016/S0014-5793(97)00052-5


1995 :

Kajava, Andrey V, Gilbert Vassart, and Shoshana J Wodak. “Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats.” Structure 3, no. 9 (1995): 867-877. doi: 10.1016/S0969-2126(01)00222-2


1993 :

Tischenko, V.M., A.M. Ichtchenko, C.V. Andreyev, and A.V. Kajava. “Thermodynamic Studies of the Collagen-like Region of Human Subcomponent C1q.” Journal of Molecular Biology 234, no. 3 (1993): 654-660. doi: 10.1006/jmbi.1993.1618

Kajava, Andrey V., and Steven E. Lindow. “A Model of the Three-dimensional Structure of Ice Nucleation Proteins.” Journal of Molecular Biology 232, no. 3 (1993): 709-717. doi: 10.1006/jmbi.1993.1424


1992 :

Kajava, A.V., and A.V. Kajava. “Left-handed topology of super-secondary structure formed by aligned α-helix and β-hairpin.” FEBS Letters 302, no. 1 (1992): 8-10. doi: 10.1016/0014-5793(92)80271-H


1991 :

Kajava, A. V., M. V. Bogdanov, and M. A. Nesmeyanova. “Stereochemical Analysis of Interaction of Signal Peptide with Phospholipids at the Initiation of Protein Translocation Across the Membrane.” Journal of Biomolecular Structure and Dynamics 9, no. 1 (1991): 143-157. doi: 10.1080/07391102.1991.10507899

Kajava, A.V., and A.V. Kajava. “Molecular packing in type I collagen fibrils.” Journal of Molecular Biology 218, no. 4 (1991): 815-823. doi: 10.1016/0022-2836(91)90269-C