Bioinformatique Structurale et Modélisation Moléculaire
CRBM-CNRS Montpellier

Scan protein sequence against CRBM libraries of sequence profiles

Profiles are constructed by using program package pftools (Bucher et al. (1996) Comput. Chem. 20, 3-23.) This page uses Pfscan module of pftools that allows to find known protein motifs in a given sequence.

Library "REPEATS" contains profiles of the known tandem repeats. Each profile spans several (normally 3) repeats and this affords a more sensitive probe of noisy data than a single repeat (e.g. Kajava (1998) J.Mol.Biol. 277, 519-527). Detail information about profiles can be found in their annotations.
Library "PROTEIN DOMAINS" contains the other sequence motifs.

Paste your protein sequence in FASTA format:

Or upload a FASTA sequence file :